Package com.xinapse.multisliceimage

package com.xinapse.multisliceimage

This package is used to represent and handle multi-dimensional Medical Images in different file formats. The following pixel data types are fully implemented:

• 1 bit per pixel binary (PixelDataType.BINARY).
• 1 unsigned byte per pixel (PixelDataType.UBYTE).
• 1 signed byte per pixel (PixelDataType.BYTE).
• 1 unsigned short per pixel (PixelDataType.USHORT).
• 1 signed short per pixel (PixelDataType.SHORT).
• 1 unsigned int per pixel (PixelDataType.UINT).
• 1 signed int per pixel (PixelDataType.INT).
• 1 signed long per pixel (PixelDataType.LONG).
• 1 float per pixel (PixelDataType.FLOAT).
• 1 double per pixel (PixelDataType.DOUBLE).
• 2 floats per pixel (interlaced) forming complex numbers (PixelDataType.COMPLEX).
• 2 doubles per pixel (interlaced) forming complex numbers (PixelDataType.COMPLEX).
• 3 interlaced unsigned bytes per pixel representing red, green and blue channels (PixelDataType.RGB_INTERLACED ).
• 3 unsigned bytes per pixel (non-interlaced) representing red, green and blue planes (PixelDataType.RGB_BY_PLANE). This is equivalent to the Analyze RGB format.
• 4 unsigned bytes per pixel (interlaced) representing red, green, blue and alpha values (PixelDataType.COLOURPACKED). This is equivalent to the UNC COLORPACKED format.

Both big-endian and little-endian byte ordering are implemented and supported. When reading existing images, the byte order is auto detected. When existing images are copied or modified, the original byte order is retained. For images newly-created from scratch, the byte ordering is that native to the computer on which Jim is running.

Related Packages

Package	Description
com.xinapse.multisliceimage.analyze	Used to represent and handle the Analyze Medical Image file format, and the NIFTI-1 and NIFTI-2 extensions of this format.
com.xinapse.multisliceimage.roi	Used to create and manipulate 2-dimensional regions of interest (ROIs).
com.xinapse.multisliceimage.unc	Used to represent and handle multi-dimensional medical images in the University of North Carolina (UNC) format.

Class	Description
CopyTest	A unit test of copying one image to another.
ImageName	Class to add extensions, prefixes and suffices to image file and URL names.
InfoStorer	An interface that classes implement to indicate that they can store arbitrary textual information.
MultiSliceImage	An abstract representation of a multi-dimensional image.
OpenStressTest	Class to perform stress testing of instatiation for MultiSliceImages sub-classes.
TestSuite	For running a self-test.