Package com.xinapse.multisliceimage.Analyze

package com.xinapse.multisliceimage.Analyze

The package com.xinapse.multisliceimage.Analyze is used to represent and handle the Analyze Medical Image file format, and the NIFTI-1 and NIFTI-2 extensions of this format. All NIFTI-1 data types are implemented by this package except:

• ANZPixFormat.NIFTI_UINT64, and
• ANZPixFormat.NIFTI_COMPLEX256,

since these have no native Java data types capable of storing these data types.

Of course, only the standard Analyze 7.5 data types may be used with Analyze75Image images.

Both big-endian and little-endian byte ordering are implemented and supported. When reading exsiting images, the byte order is auto detected from the header file. When existing images are copied or modified, the original byte order is retained. For images newly-created from scratch by this package, the byte ordering is always the native byte order.

Related Packages

Package	Description
com.xinapse.multisliceimage	The package com.xinapse.multisliceimage is used to represent and handle multi-dimensional Medical Images in different file formats.
com.xinapse.multisliceimage.roi	The package com.xinapse.multisliceimage.roi is used to create and manipulate 2-dimensional regions of interest (ROIs).
com.xinapse.multisliceimage.UNC	The package com.xinapse.multisliceimage.UNC is used to represent and handle multi-dimensional medical images in the University of North Carolina (UNC) format.

Class	Description
AFNIExtendedData	This abstract class handles the NIFTI 1.1 extended data.
Analyze75Header	This class represents a multi-dimensional Analyze 7.5 image header file.
Analyze75Image	This class is a representation of a multi-dimensional image in the Analyze 7.5 format.
AnalyzeFileFilter	A file filter for Analyze header files.
ANZColourMapping	Class to handle Analyze lookup files (colour mapping files).
ANZDebug	Enables and disables debugging messages for the Analyze package.
ANZException	Signals that an error in the Analyze package has occurred.
ANZHeader	An abstract Analyze header representation.
ANZImage	This is an abstract class that is the superclass of a multi-dimensional image in the Analyze 7.5 format or the NIFTI format.
ANZPixFormat	This class represents the pixel formats (data types) that can be used in Analyze, and NIFTI (extended Analyze) images.
CommentExtendedData	This class handles the NIFTI 1.1 non-NUL ASCII text extended data.
DICOMExtendedData	This class handles NIFTI 1.1 DICOM extended data.
InfoExtendedData	NIFTI 1.1 extended data that allows artibrary text to be associated with an image.
NIFTI2Header	This class represents a multi-dimensional NIFTI-2 image header file.
NIFTI2Image	This class is a representation of a multi-dimensional image in the NIFTI-2 format, the updated NIFTI format.
NIFTIFileFilter	A file filter for NIFTI images.
NIFTIHeader	This class represents a multi-dimensional NIFTI-1 image header file.
NIFTIImage	This class is a representation of a multi-dimensional image in the NIFTI-1 format (see The Neuroimaging Informatics Technology Initiative), an extension of the original Analyze 7.5 format (see The Biomedical Imaging Resource).
NIFTIIntent	This class represents the NIFTI intents.
NIFTIXForm	This class represents the NIFTI qforms and sforms.
SliceOrder	This class represents the timing pattern of the slice acquisition.
TUnits	This class represents the NIFTI units of time.
UnknownExtendedData	This class handles private (unknown-format) NIFTI 1.1 extended data.
XCEDEExtendedData	This class handles NIFTI 1.1 XCEDE extended data.
XMLExtendedData	This abstract class handles NIFTI 1.1 XML extended data.
XYZUnits	This class represents the NIFTI units of length.