Package com.xinapse.multisliceimage.Analyze

Class NIFTI2Header

java.lang.Object

com.xinapse.multisliceimage.Analyze.ANZHeader

com.xinapse.multisliceimage.Analyze.NIFTIHeader

com.xinapse.multisliceimage.Analyze.NIFTI2Header

All Implemented Interfaces:

Cloneable

public class NIFTI2Header
extends NIFTIHeader

This class represents a multi-dimensional NIFTI-2 image header file. The header file may either:

• contain all the dimensional and descriptive information about a NIFTI-2 image, but none of the pixel data. This is like the Analyze 7.5 .img/.hdr file format.
• contain both the dimensional and descriptive information about a NIFTI-2 image, and also the pixel data.

Field Summary

Fields inherited from class com.xinapse.multisliceimage.Analyze.NIFTIHeader

DEFAULT_FSL_COMPATIBLE_NIFTI, DEFAULT_SAVE_FSL_ORIENT, DEFAULT_SAVE_SPM_ORIENT, extData, extension, FSL_COMPATIBLE_NIFTI_PROPERTY_KEY, magic, qForm, qOffsetX, qOffsetY, qOffsetZ, quaternB, quaternC, quaternD, SAVE_FSL_ORIENT_PROPERTY_KEY, SAVE_SPM_ORIENT_PROPERTY_KEY, sForm, sRowX, sRowY, sRowZ

Fields inherited from class com.xinapse.multisliceimage.Analyze.ANZHeader

AUXFILE_LEN, COMPRESSED_EXTENSION, COMPRESSED_UPPERCASE_EXTENSION, DESCRIPTION_LEN, EXTENSION, MAXDIM, UPPERCASE_EXTENSION, voxOffset

Method Summary

Modifier and Type	Method	Description
protected int	getHeaderSize()	Returns the size of this NIFTI (NIFTI-1 or NIFTI-2) header.
void	setNCols(int nc)	Sets the number of columns in this NIFTI-2 image header.
void	setNFrames(int nF)	Sets the number of frames in this NIFTI-2 image header.
void	setNRows(int nr)	Sets the number of rows in this NIFTI-2 image header.
void	setNSlices(int ns)	Sets the number of slices in this NIFTI-2 image header.

Methods inherited from class com.xinapse.multisliceimage.Analyze.NIFTIHeader

clone, getPreferredFSLCompatibleNIFTI, getPreferredSaveFSLOrient, getPreferredSaveSPMOrient, readExtensions, readExtensions, savePreferredFSLCompatibleNIFTI, savePreferredSaveFSLOrient, savePreferredSaveSPMOrient, setImageOrientationPositionPatient, toString, toString, writeExtensions, writeExtensions

Methods inherited from class com.xinapse.multisliceimage.Analyze.ANZHeader

getDBName, getDescription, getMinMax, setDBName, setDims, setDims, setMinMax, setNCols, setNFrames, setNRows, setNSlices

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Method Details

getHeaderSize

protected int getHeaderSize()

Description copied from class: NIFTIHeader

Returns the size of this NIFTI (NIFTI-1 or NIFTI-2) header.

Overrides:

getHeaderSize in class NIFTIHeader

Returns:

the size of this NIFTI header.

setNCols

public void setNCols(int nc)

Sets the number of columns in this NIFTI-2 image header. Warning! If this image header is associated with a set of pixel values in a NIFTI2Image, then manipulating the number of columns in this way will cause errors.

Parameters:

nc - the number of columns.

setNRows

public void setNRows(int nr)

Sets the number of rows in this NIFTI-2 image header. Warning! If this image header is associated with a set of pixel values in a NIFTI2Image, then manipulating the number of rows in this way will cause errors.

Parameters:

nr - the number of rows.

setNSlices

public void setNSlices(int ns)

Sets the number of slices in this NIFTI-2 image header. Warning! If this image header is associated with a set of pixel values into a NIFTI2Image, then manipulating the number of slices in this way will cause errors.

Parameters:

ns - the number of slices.

setNFrames

public void setNFrames(int nF)

Sets the number of frames in this NIFTI-2 image header. Warning! If this image header is associated with a set of pixel values in a NIFTI2Image, then manipulating the number of frames in this way will cause errors.

Parameters:

nF - the number of frames.