Package com.xinapse.multisliceimage.roi

Class VOI

java.lang.Object

java.util.AbstractCollection<E>

java.util.AbstractList<E>

java.util.AbstractSequentialList<E>

java.util.LinkedList<ROI>

com.xinapse.multisliceimage.roi.VOI

All Implemented Interfaces:

Serializable, Cloneable, Iterable<ROI>, Collection<ROI>, Deque<ROI>, List<ROI>, Queue<ROI>

public class VOI
extends LinkedList<ROI>

A volume-of-interest, which is a stack of ROIs that connect in 3-D across slices.

See Also:

• Serialized Form

Field Summary

Fields inherited from class java.util.AbstractList

modCount

Constructor Summary

Constructors

Constructor	Description
VOI()	Creates a new (empty) VOI.

Method Summary

Modifier and Type	Method	Description
void	addROI(ROI roi)	Add an ROI to this VOI.
boolean	contains(ROI roi)	Tests whether this volume of interest (VOI) contains an ROI.
static List<VOI>	getVOIs(List<ROI> rois)	Returns a List of VOIs (3-D volumes of interest) created from a List of ROIs.
double	getVolume(float pixelZSize)	Returns the volume of a VOI.
boolean	intersects(ROI roi)	Tests whether this volume of interest (VOI) intersects an ROI.

Methods inherited from class java.util.LinkedList

add, add, addAll, addAll, addFirst, addLast, clear, clone, contains, descendingIterator, element, get, getFirst, getLast, indexOf, lastIndexOf, listIterator, offer, offerFirst, offerLast, peek, peekFirst, peekLast, poll, pollFirst, pollLast, pop, push, remove, remove, remove, removeFirst, removeFirstOccurrence, removeLast, removeLastOccurrence, set, size, spliterator, toArray, toArray

Methods inherited from class java.util.AbstractSequentialList

iterator

Methods inherited from class java.util.AbstractList

equals, hashCode, listIterator, removeRange, subList

Methods inherited from class java.util.AbstractCollection

containsAll, isEmpty, removeAll, retainAll, toString

Methods inherited from class java.lang.Object

finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.util.Collection

parallelStream, removeIf, stream, toArray

Methods inherited from interface java.util.Deque

iterator

Methods inherited from interface java.lang.Iterable

forEach

Methods inherited from interface java.util.List

containsAll, equals, hashCode, isEmpty, iterator, listIterator, removeAll, replaceAll, retainAll, sort, subList

Constructor Details

VOI

public VOI()

Creates a new (empty) VOI.

Method Details

addROI

public void addROI(ROI roi)

Add an ROI to this VOI.

Parameters:

roi - the ROI to add.

getVOIs

public static List<VOI> getVOIs(List<ROI> rois)

Returns a List of VOIs (3-D volumes of interest) created from a List of ROIs.

Parameters:

rois - the List of ROIs to connect in 3-D to produce VOIs.

Returns:

a List of VOIs.

contains

public boolean contains(ROI roi)

Tests whether this volume of interest (VOI) contains an ROI.

Parameters:

roi - the ROI to test whether it is contained in this VOI.

Returns:

true if the roi is within the VOI; false otherwise.

intersects

public boolean intersects(ROI roi)

Tests whether this volume of interest (VOI) intersects an ROI.

Parameters:

roi - the ROI to test whether it is intersected by this VOI.

Returns:

true if the roi intersects the VOI; false otherwise.

getVolume

public double getVolume(float pixelZSize)

Returns the volume of a VOI. The volume is simply the summed area of all ROIs within a VOI, multiplied by the distance between slices.

Parameters:

pixelZSize - the distance between slice centres.

Returns:

the volume (in cubic mm) of the supplied VOI.