Class ICC

java.lang.Object

com.xinapse.image.template.ICC

public final class ICC
extends Object

Class for obtaining an intra-cranial cavity (ICC) mask from cerebral tissue probability maps.

Method Summary

Modifier and Type	Method	Description
static com.xinapse.apps.mask.BinaryMask	getMask(float[] gmProb, float[] wmProb, float[] csfProb, int nCols, int nRows, int nSlices, boolean conservative)	Returns an ICC mask from maps of the grey-matter, white-matter and CSF probability.
static com.xinapse.apps.mask.BinaryMask	getMask(ReadableImage gmProbImage, ReadableImage wmProbImage, ReadableImage csfProbImage, boolean conservative)	Returns an ICC mask from images of the grey-matter, white-matter and CSF probability.

Methods inherited from class Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Details

getMask

public static com.xinapse.apps.mask.BinaryMask getMask(ReadableImage gmProbImage,
 ReadableImage wmProbImage,
 ReadableImage csfProbImage,
 boolean conservative)
                                                throws InvalidArgumentException,
InvalidImageException

Returns an ICC mask from images of the grey-matter, white-matter and CSF probability.

Parameters:

gmProbImage - the grey-matter probability image.

wmProbImage - the white-matter probability image.

csfProbImage - the CSF probability image.

conservative - true if the mask is to be conservative (i.e., pixels in final mask are more likely to fall within the ICC); false for a more inclusive mask.

Returns:

a BinaryMask of the intra-cranial cavity.

Throws:

InvalidImageException - if any of the input images is unsuitable.

InvalidArgumentException - if the input images have mismatched dimensions.

getMask

public static com.xinapse.apps.mask.BinaryMask getMask(float[] gmProb,
 float[] wmProb,
 float[] csfProb,
 int nCols,
 int nRows,
 int nSlices,
 boolean conservative)
                                                throws InvalidArgumentException

Returns an ICC mask from maps of the grey-matter, white-matter and CSF probability.

Parameters:

gmProb - the grey-matter probability map.

wmProb - the white-matter probability map.

csfProb - the CSF probability map.

nCols - the number of voxel columns in the probability maps.

nRows - the number of voxel rows in the probability maps.

nSlices - the number of voxel slices in the probability maps.

conservative - true if the mask is to be conservative (i.e., pixels in final mask are more likely to fall within the ICC); false for a more inclusive mask.

Returns:

a BinaryMask of the intra-cranial cavity.

Throws:

InvalidArgumentException - if the input probability maps have mismatched dimensions.