Tools with both GUI and Command-Line Interface
The following stand-alone tools have both a graphical (GUI) and command-line interface.
Most of the GUI versions have Tool appended to their name, and are shown first below, with name of the command-line version shown after.
To see the Usage message for a command-line version, run it with the Option --help.
- AIFResamplerTool and AIFResampler
- AlgebraTool and Algebra
- AnonymiseTool and Anonymise
- BrainAtrophyTool and BrainAtrophy
- BrainFinderTool, BrainFinder and BrainFinder2
- BrainFUTool and BrainFU
- CardiacTool and Cardiac
- CEST WASSR, Asymmetry, LorentzianFitter and pHEstimator
- ConcatenatorTool and Concatenator
- ConverterTool and Converter
- CordFinderTool and CordFinder
- CordFUTool and CordFU
- DCEMRITool and DCEMRI
- DefaceTool and Deface
- DeMosaicTool and DeMosaic
- DiffusionTool, WarpCorrection, DiffusionFitter and Tractograph
- DimChangerTool and DimChanger
- DynamicTool and Dynamic
- FitterTool and Fitter
- FromComplexTool and FromComplex
- FuzzyConnectorTool and FuzzyConnector
- InterleaverTool and Interleaver
- MaskerTool and Masker
- ParticleTool and Particle
- PerfusionTool and Perfusion
- PictureConverterTool and PictureConverter
- QFatTool and QFat
- QSM QSMUnwrap, QSMDebackground, QSMInvert
- RawConverterTool and RawConverter
- RegisterTool and Register
- ResampleTool and Resample
- ROIPropagateTool and ROIPropagate
- SliceExtractorTool and SliceExtractor
- StorageServerTool and StorageServer
- ToComplexTool and ToComplex
- ToRGBTool and ToRGB
- TSRegisterTool and TSRegister
- UnicorrTool and Unicorr